Приложения в биоинформатике
Y.Y. Vaskin, I.V. Khomicheva, E.V. Ignatieva, E.E. Vityaev
ExpertDiscovery and UGENE integrated system for intelligent analysis of regulatory regions of genes .
In Silico Biology v.11 (2011/2012), IOS Press, pp. 97-108
Васькин Ю.Ю., Хомичева И.В., Игнатьева Е.В., Витяев Е.Е.
Анализ последовательностей регуляторных районов генов реляционной системой ExpertDiscovery, встроенной в пакет UGENE .
Вестник НГУ, серия: Информационные технологии, Т.10, вып. 1, Новосибирск, 2012, стр. 73-86
Irina Khomicheva, Evgenii Vityaev, Yurii Vaskin, and Timur Shipilov.
Analysis and Prediction of Regulatory Regions of Eukaryotic Genes by integrated UGENE and ExpertDiscovery Systems.
DMFGP '11, The 5th International Workshop on Data Mining in Functional Genomics and Proteomics:
Current Trends and Future Directions (ECML-PKDD 2011 European Conference on Machine Learning and Principles and Practices of Knowledge Discovery in Databases),
September 5, 2011, Athens, Greece, pp. 43-52.
Хомичева И. В., Витяев Е.Е., Игнатьева Е.В., Ананько А.Е., Шипилов Т.И.
Применение программной системы ExpertDiscovery для поиска закономерностей структурно-функциональной организации регуляторных районов генов.
Вестник НГУ, серия: Информационные технологии, Т. 8, вып. 1, Новосибирск, 2010, стр. 12-26, 2010
Khomicheva I.V., Vityaev E.E., Ananko E.A., Shipilov T.I., Levitsky V.G.
ExpertDiscovery system application for the hierarchical analysis of eukaryotic transcription regulatory regions based on DNA codes of transcription.
Intelligent Data Analysis,
Special issue on "Machine learning and bioinformatics"
eds. Nikolai Kolchanov, Evgenii Vityaev. v.12(5), IOS Press, 2008, pp. 481-494
Vityaev Е.E., Lapardin K.A., Khomicheva I.V., Proskura A.,L.
Transcription factor binding site recognition by regularity matrices based on the natural classification method.
Intelligent Data Analysis,
Special issue on "Machine learning and bioinformatics"
eds. Nikolai Kolchanov, Evgenii Vityaev. v.12(5), IOS Press, 2008, pp. 495-512
Шипилов Т.И., Хомичева И.В., Витяев Е.Е.
Программная система ExpertDiscovery для анализа регуляторных районов ДНК.
Информационные технологии работы со знаниями: обнаружение, поиск, управление (Вычислительные системы, вып. 175), Новосибирск, 2008, стр. 136-156
Khomicheva, A. Demin, E. Vityaev
Transcription Factor Binding Site Discovery by the Probabilistic Rules.
Proceedings of the 2nd workshop in data mining in functional genomics and proteomics.
The 18th European conference on Machine Learning and the
11th European conference on Principles and Practice of Knowledge Discovery in Databases.
Warsaw, Poland, September 17-21, 2007, p.104-109
E.E. Vityaev, T.I. Shipilov, M.A. Pozdnyakov, O.V. Vishnevsky, A.L., Proscura, Yu.L. Orlov, P. Arrigo
Software for analysis of gene regulatory sequences by knowledge discovery methods.
In: Bioinformatics of Genome Regulation and Structure II.
(Eds. N.Kolchanov and R. Hofestaedt) Springer Science+Business Media, Inc. 2006, pp. 491-498. (preliminary version)
Nikolay A. Kolchanov, Mikhail A. Pozdnyakov, Yury L. Orlov, Oleg V. Vishnevsky, Nikolay L. Podkolodny, Eugenii E. Vityaev and Boris Kovalerchuk.
Computer System "Gene Discovery" for Promoter Structure Analysis
In: Artificial Intelligence and Heuristic Methods in Bioinformatics,
Eds: P. Frasconi and R. Shamir, IOS Press, 2003, pp.173-192 (preliminary version)
Vityaev E.E., Orlov Yu.L., Pozdnyakov M.A., Vishnevsky O.V., Kolchanov N.A., Kovalerchuk B.K.
Knowledge Discovery for Promoter Structure Analysis.
In: Proceedings of the International Conference on Imaging Science, Systems, and Technology
Eds.: Hamid R. Arabnia, Youngsong Mun, Las Vegas, Nevada, USA, June 24-27, 2002, CSREA Press, v.1, 122-128
Vityaev E.E., OrlovYu.L., Vishnevsky O.V., Kovalerchuk B.K., Belenok A.S., Podkolodnii N.L., Kolchanov N.A.
Computer system "Gene Discovery" for functional annotation of DNA sequences.
In: ECML'2001 Workshop Machine Learning as Philosophy of Science Ed. K.B. Korb, H. Bensusan, Freiburg, Sept., 2001. p.1-11.
Vityaev E.E. et al.,
Computer system "Gene Discovery" for promoter structure analysis,
In Silico Biol. 2 (2002) 0024
Vityaev E.E., OrlovYu.L., Pozdnyakov M.A., Levitsky V.G., Vishnevsky O.V., Podkolodnii N.L., Kolchanov N.A.
Computer system "Gene Discovery" for regularities retrieving and knowledge representation in integrated electronic library "GeneExpress" on gene expression regulation.
(RCDL'2002 - Forth All Russia conference "Electronic libraries: perspective methods and technologies, electronic collections", Dubna, 15-17 oct. 2002), 6p (in Russian). http://rcdl2002.jinr.ru/login_r.htm.
Vityaev E.E., Orlov Yu.L., Vishnevsky O.V., Belenok A.S., Kolchanov N.A.
Computer System "Gene Discovery" to Search for Patterns in Eukaryotic Regulatory Nucleotide Sequences,
Molecular Biology, Vol. 35, No. 6, 2001, pp. 810-817
Vityaev E.E., Vishnevsky O.V. Analysis and Recognition of Erythroid-Specific
Gene Promoters basing on trancated Oligonucleotide Motifs,
J. Mol. Biology, 2001, 35:6 (in Russian).
Pozdnyakov M.A., Vityaev E.E., Anan'ko Е.А., Ignat'eva Е.V., Podkolodnaya O.A., Podkolodnii N.L.,
Lavryshev S.V., Kolchanov N.A.,
Comparative Analysis of Methods Recognizing Potential Transcription Factor Binding Sites,
Molecular Biology, Vol. 35, No. 6, 2001, pp. 818-825.
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