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   Authors
    -  Evgenii Vityaev
    -  Boris Kovalerchuk


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Last updated 01/02/2018

Bioinformatics

  • Arthur I. Dergilev, Anatoly V. Svichkarev, Nataly N. Podkolodnaya, EvgeniiE. Vityaev and Yuriy L. Orlov. Computer Analysis of Genome Co-Localization of Transcription Factor Binding Sites Based on Chip-Seq Data // Proceedings of the 6th International Conference on Computational Systems-Biology and Bioinformatics 2015 (CSBio-2015). 22-25 November 2015 Bangkok, Thailand. King Mongkut's University of Technology Thonburi. P. 103-107.

  • Y.Y. Vaskin, I.V. Khomicheva, E.V. Ignatieva, E.E. Vityaev ExpertDiscovery and UGENE integrated system for intelligent analysis of regulatory regions of genes . In Silico Biology v.11 (2011/2012), IOS Press, pp. 97-108

  • Irina Khomicheva, Evgenii Vityaev, Yurii Vaskin, and Timur Shipilov. Analysis and Prediction of Regulatory Regions of Eukaryotic Genes by integrated UGENE and ExpertDiscovery Systems. DMFGP '11, The 5th International Workshop on Data Mining in Functional Genomics and Proteomics: Current Trends and Future Directions (ECML-PKDD 2011 European Conference on Machine Learning and Principles and Practices of Knowledge Discovery in Databases), September 5, 2011, Athens, Greece, pp. 43-52.

  • Khomicheva I.V., Vityaev E.E., Ananko E.A., Shipilov T.I., Levitsky V.G. ExpertDiscovery system application for the hierarchical analysis of eukaryotic transcription regulatory regions based on DNA codes of transcription. Intelligent Data Analysis, Special issue on "Machine learning and bioinformatics" eds. Nikolai Kolchanov, Evgenii Vityaev. v.12(5), IOS Press, 2008, pp. 481-494

  • Vityaev .E., Lapardin K.A., Khomicheva I.V., Proskura A.,L. Transcription factor binding site recognition by regularity matrices based on the natural classification method. Intelligent Data Analysis, Special issue on "Machine learning and bioinformatics" eds. Nikolai Kolchanov, Evgenii Vityaev. v.12(5), IOS Press, 2008, pp. 495-512

  • Khomicheva, A. Demin, E. Vityaev Transcription Factor Binding Site Discovery by the Probabilistic Rules. Proceedings of the 2nd workshop in data mining in functional genomics and proteomics. The 18th European conference on Machine Learning and the 11th European conference on Principles and Practice of Knowledge Discovery in Databases. Warsaw, Poland, September 17-21, 2007, p.104-109

  • E.E. Vityaev, T.I. Shipilov, M.A. Pozdnyakov, O.V. Vishnevsky, A.L., Proscura, Yu.L. Orlov, P. Arrigo Software for analysis of gene regulatory sequences by knowledge discovery methods. In: Bioinformatics of Genome Regulation and Structure II. (Eds. N.Kolchanov and R. Hofestaedt) Springer Science+Business Media, Inc. 2006, pp. 491-498. (preliminary version)

  • Nikolay A. Kolchanov, Mikhail A. Pozdnyakov, Yury L. Orlov, Oleg V. Vishnevsky, Nikolay L. Podkolodny, Eugenii E. Vityaev and Boris Kovalerchuk. Computer System "Gene Discovery" for Promoter Structure Analysis In: Artificial Intelligence and Heuristic Methods in Bioinformatics, Eds: P. Frasconi and R. Shamir, IOS Press, 2003, pp.173-192 (preliminary version)

  • Vityaev E.E., Orlov Yu.L., Pozdnyakov M.A., Vishnevsky O.V., Kolchanov N.A., Kovalerchuk B.K. Knowledge Discovery for Promoter Structure Analysis. In: Proceedings of the International Conference on Imaging Science, Systems, and Technology Eds.: Hamid R. Arabnia, Youngsong Mun, Las Vegas, Nevada, USA, June 24-27, 2002, CSREA Press, v.1, 122-128

  • Vityaev E.E., OrlovYu.L., Vishnevsky O.V., Kovalerchuk B.K., Belenok A.S., Podkolodnii N.L., Kolchanov N.A. Computer system "Gene Discovery" for functional annotation of DNA sequences. In: ECML'2001 Workshop Machine Learning as Philosophy of Science Ed. K.B. Korb, H. Bensusan, Freiburg, Sept., 2001. p.1-11.

  • Vityaev E.E. et al., Computer system "Gene Discovery" for promoter structure analysis, In Silico Biol. 2 (2002) 0024

  • Vityaev E.E., OrlovYu.L., Pozdnyakov M.A., Levitsky V.G., Vishnevsky O.V., Podkolodnii N.L., Kolchanov N.A. Computer system "Gene Discovery" for regularities retrieving and knowledge representation in integrated electronic library "GeneExpress" on gene expression regulation. (RCDL'2002 - Forth All Russia conference "Electronic libraries: perspective methods and technologies, electronic collections", Dubna, 15-17 oct. 2002), 6p (in Russian). http://rcdl2002.jinr.ru/login_r.htm.

  • Vityaev E.E., Orlov Yu.L., Vishnevsky O.V., Belenok A.S., Kolchanov N.A. Computer System "Gene Discovery" to Search for Patterns in Eukaryotic Regulatory Nucleotide Sequences, Molecular Biology, Vol. 35, No. 6, 2001, pp. 810-817

  • Vityaev E.E., Vishnevsky O.V. Analysis and Recognition of Erythroid-Specific Gene Promoters basing on trancated Oligonucleotide Motifs, J. Mol. Biology, 2001, 35:6 (in Russian).

  • Pozdnyakov M.A., Vityaev E.E., Anan'ko .., Ignat'eva .V., Podkolodnaya O.A., Podkolodnii N.L., Lavryshev S.V., Kolchanov N.A., Comparative Analysis of Methods Recognizing Potential Transcription Factor Binding Sites, Molecular Biology, Vol. 35, No. 6, 2001, pp. 818-825.